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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vrv YSD Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vrv YSDVitamin D3 receptor / 1.497
3vru YS3Vitamin D3 receptor / 1.310
2zl9 VDAVitamin D3 receptor / 1.303
3vt5 YI2Vitamin D3 receptor / 1.258
1rkh VD2Vitamin D3 receptor / 1.252
2zla VDBVitamin D3 receptor / 1.206
3vt8 YI3Vitamin D3 receptor / 1.206
2o4r VD5Vitamin D3 receptor / 1.196
2zlc VDXVitamin D3 receptor / 1.188
3vt7 VDXVitamin D3 receptor / 1.170
3vt4 5YIVitamin D3 receptor / 1.138
1rkg VD1Vitamin D3 receptor / 1.133
3vt6 5YIVitamin D3 receptor / 1.130
3vt9 YI4Vitamin D3 receptor / 1.116
2har OCCVitamin D3 receptor / 1.112
3vtc TK3Vitamin D3 receptor / 1.103
1rk3 VDXVitamin D3 receptor / 1.101
1rjk VDZVitamin D3 receptor / 1.100
3vrw YS5Vitamin D3 receptor / 1.090
2has C3OVitamin D3 receptor / 1.076
4ruj VDXVitamin D3 receptor A / 1.035
2o4j VD4Vitamin D3 receptor / 1.034
1s19 MC9Vitamin D3 receptor / 1.030
2ham C33Vitamin D3 receptor / 1.029
3m7r VDXVitamin D3 receptor / 1.008
3vtd TKDVitamin D3 receptor / 0.994
1s0z EB1Vitamin D3 receptor / 0.991
2hb7 O1CVitamin D3 receptor / 0.987
1db1 VDXVitamin D3 receptor / 0.971
3vrt YS2Vitamin D3 receptor / 0.967
2hb8 MVDVitamin D3 receptor / 0.958
4itf TFYVitamin D3 receptor / 0.935
2hc4 VDXVitamin D3 receptor A / 0.893
3kpz ZNEVitamin D3 receptor / 0.892
4ia3 BIVVitamin D3 receptor A / 0.892
1ie8 KH1Vitamin D3 receptor / 0.857
4ia7 BIVVitamin D3 receptor A / 0.849
4ite TEYVitamin D3 receptor / 0.819
3w0j T08Vitamin D3 receptor / 0.817
2hcd BIVVitamin D3 receptor A / 0.816
1ie9 VDXVitamin D3 receptor / 0.798
3vtb TKAVitamin D3 receptor / 0.788
4ia2 BIVVitamin D3 receptor A / 0.766
4ruo BIVVitamin D3 receptor A / 0.757
1txi TX5Vitamin D3 receptor / 0.746
3dr1 C5DVitamin D3 receptor A / 0.746
3w0h W12Vitamin D3 receptor / 0.711
3w0g W07Vitamin D3 receptor / 0.703
4rup H97Vitamin D3 receptor A / 0.686
2hbh XE4Vitamin D3 receptor A / 0.682
4fhh 0U3Vitamin D3 receptor A / 0.675
3w0i O11Vitamin D3 receptor / 0.669
4ia1 BIVVitamin D3 receptor A / 0.667