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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vqh IQB cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vqh IQBcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.025
2c1a I5ScAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.825
2jdt I5ScAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.807
2c1b CQPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.798
1ydt IQBcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.794
1ydr IQPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.763
2gni M77cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.750
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2gnl H52cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.728
1q8u H52cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.727
1q8w M77cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.723
3l9n L9NcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.717
2f2u M77Rho-associated protein kinase 2 2.7.11.1 0.705
3l9l L9LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.702
2jds L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.701
1xh5 R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.700
2gnh H52cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.697
1p2a 5BNCyclin-dependent kinase 2 2.7.11.22 0.690
3tku M77Serine/threonine-protein kinase MRCK beta 2.7.11.1 0.690
1xh9 R69cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.682
1svh I08cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.681
1xh6 R94cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.679
3oog YTPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.679
2f7e 2EAcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.675
2jdv L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.673
1rej B1LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.672
3v8s 0HDRho-associated protein kinase 1 2.7.11.1 0.672
4jlc SU6Serine/threonine-protein kinase TBK1 2.7.11.1 0.671
1sve I01cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.670
1xha R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.668
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.668
1xh8 R55cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.665
2uzt SS3cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
2hog 710Serine/threonine-protein kinase Chk1 2.7.11.1 0.661
3fl8 RARDihydrofolate reductase / 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4c34 STUcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
1pmv 537Mitogen-activated protein kinase 10 2.7.11.24 0.654
1xh4 R69cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
1q41 IXMGlycogen synthase kinase-3 beta 2.7.11.26 0.650