Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vi4 ARG_GLY_ASP_ASN Integrin beta-1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vi4 ARG_GLY_ASP_ASNIntegrin beta-1 / 0.844
3vi4 ARG_GLY_ASP_ASNIntegrin alpha-5 / 0.844
1drt PCVClavaminate synthase 1 1.14.11.21 0.744
3mle ADPATP-dependent dethiobiotin synthetase BioD 6.3.3.3 0.744
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.744