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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3v0x ANH Cationic trypsin 3.4.21.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3v0x ANHCationic trypsin 3.4.21.4 0.919
4e7r 0NWProthrombin 3.4.21.5 0.778
1u6q 745Urokinase-type plasminogen activator 3.4.21.73 0.775
4baq M4ZProthrombin 3.4.21.5 0.770
4fuj 1U9Urokinase-type plasminogen activator 3.4.21.73 0.766
1zsk 421Coagulation factor XI 3.4.21.27 0.764
1owe 675Urokinase-type plasminogen activator 3.4.21.73 0.753
4bah MELProthrombin 3.4.21.5 0.743
4ban M6SProthrombin 3.4.21.5 0.743
1owd 497Urokinase-type plasminogen activator 3.4.21.73 0.741
1riw OSCProthrombin 3.4.21.5 0.740
1k22 MELProthrombin 3.4.21.5 0.739
4bak M67Prothrombin 3.4.21.5 0.739
1owk 303Urokinase-type plasminogen activator 3.4.21.73 0.731
1sqt UI3Urokinase-type plasminogen activator 3.4.21.73 0.731
4az2 9MUProthrombin 3.4.21.5 0.731
1ghv 120Prothrombin 3.4.21.5 0.730
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.730
2znk 31UProthrombin 3.4.21.5 0.725
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.722
3biv 11UProthrombin 3.4.21.5 0.722
2bok 784Coagulation factor X 3.4.21.6 0.714
2v3o I26Prothrombin 3.4.21.5 0.713
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.712
2zfq 45UProthrombin 3.4.21.5 0.712
4fub 4UPUrokinase-type plasminogen activator 3.4.21.73 0.711
4fuf 8UPUrokinase-type plasminogen activator 3.4.21.73 0.711
1nzq 162Prothrombin 3.4.21.5 0.708
1c1u BAIProthrombin 3.4.21.5 0.707
4fui UI3Urokinase-type plasminogen activator 3.4.21.73 0.703
1wtg 3BPCoagulation factor VII 3.4.21.21 0.702
3plp BBACationic trypsin 3.4.21.4 0.702
2zhf 49UProthrombin 3.4.21.5 0.701
2zp0 PI0Coagulation factor VII 3.4.21.21 0.700
2zhw 12UProthrombin 3.4.21.5 0.699
1vzq SHYProthrombin 3.4.21.5 0.698
1wv7 5PICoagulation factor VII 3.4.21.21 0.698
2zi2 24UProthrombin 3.4.21.5 0.698
1lpk CBBCoagulation factor X 3.4.21.6 0.697
4ax9 N5NProthrombin 3.4.21.5 0.696
1c1w BAHProthrombin 3.4.21.5 0.689
1k21 IGNProthrombin 3.4.21.5 0.684
4fue 7UPUrokinase-type plasminogen activator 3.4.21.73 0.680
1c4u IH1Prothrombin 3.4.21.5 0.675
4ayv 9MQProthrombin 3.4.21.5 0.675
1r35 I58Nitric oxide synthase, inducible 1.14.13.39 0.664
2pks G44Prothrombin 3.4.21.5 0.664
2viv VG2Urokinase-type plasminogen activator 3.4.21.73 0.658
4djy 0KRBeta-secretase 1 3.4.23.46 0.658
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.657
1wqv PSMCoagulation factor VII 3.4.21.21 0.657
4ne0 ZZUHydroxylase / 0.657
4b0q GMFBeta-secretase 1 3.4.23.46 0.650