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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3v0o 4GW Histo-blood group ABO system transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3v0o 4GWHisto-blood group ABO system transferase / 1.147
3v0p 4GWHisto-blood group ABO system transferase / 1.103
3v0n 4GWHisto-blood group ABO system transferase / 0.991
5c1g GDUHisto-blood group ABO system transferase / 0.921
5c3a URMHisto-blood group ABO system transferase / 0.919
3zgf IUGHisto-blood group ABO system transferase / 0.918
5c47 URMHisto-blood group ABO system transferase / 0.907
5c48 URMHisto-blood group ABO system transferase / 0.906
5c8r UPGHisto-blood group ABO system transferase / 0.902
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.878
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.870
5c1l GDUHisto-blood group ABO system transferase / 0.869
5c3b URMHisto-blood group ABO system transferase / 0.869
5c4f UPGHisto-blood group ABO system transferase / 0.863
4kc4 WS3Histo-blood group ABO system transferase / 0.862
4kc1 WS1Histo-blood group ABO system transferase / 0.861
5c1h GDUHisto-blood group ABO system transferase / 0.851
5c4c UPGHisto-blood group ABO system transferase / 0.846
3v0m 5GWHisto-blood group ABO system transferase / 0.837
4kc2 WS2Histo-blood group ABO system transferase / 0.828
5c4b UPGHisto-blood group ABO system transferase / 0.806
3rmw UPGGlycogenin-1 2.4.1.186 0.794
1zdf UPGGlycogenin-1 2.4.1.186 0.745
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.735
1ss9 UPFLgtC / 0.732
3t7o UPGGlycogenin-1 2.4.1.186 0.728
1zdg UPGGlycogenin-1 2.4.1.186 0.713
1yro GDUBeta-1,4-galactosyltransferase 1 / 0.674
3gf4 UPGUDP-galactopyranose mutase 5.4.99.9 0.665
2vkd UPGCytotoxin L / 0.661
3jsz UPGUncharacterized protein / 0.660
3tij URINucleoside permease / 0.651