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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3v01 3V0 Dual specificity mitogen-activated protein kinase kinase 1 2.7.12.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3v01 3V0Dual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.963
3v04 V04Dual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.832
3pp1 IZGDual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.776
1s9j BBMDual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.758
4an2 EUIDual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.748
3e8n VRADual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.730
3dv3 MEKDual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.717
2p55 MRADual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.673
3orn 3ORDual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.670