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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3uwq U5P Orotidine 5'-phosphate decarboxylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3uwq U5POrotidine 5'-phosphate decarboxylase / 1.020
3lzx NAPFerredoxin--NADP reductase 2 1.18.1.2 0.702
1lol XMPOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.698
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 0.689
4yl2 FMNLactate oxidase / 0.686
4gcm NAPThioredoxin reductase 1.8.1.9 0.684
2y88 2ERPhosphoribosyl isomerase A 5.3.1.16 0.681
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.673
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.672
2jb4 A14Isopenicillin N synthase 1.21.3.1 0.670
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.668
3hj9 FMNUncharacterized protein / 0.668
2vbp VB1Isopenicillin N synthase 1.21.3.1 0.665
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.663
2anb 5GPGuanylate kinase 2.7.4.8 0.662
2bjs ACVIsopenicillin N synthase 1.21.3.1 0.661
4o6m C5PUncharacterized protein / 0.660
1w06 W05Isopenicillin N synthase 1.21.3.1 0.659
3rye UNRFarnesyl pyrophosphate synthase 2.5.1.10 0.658
3nu0 3TUDihydrofolate reductase 1.5.1.3 0.657
2yyu C5POrotidine 5'-phosphate decarboxylase / 0.655
3mvw BHZNickel-binding periplasmic protein / 0.654
2zzc NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.652
3cd2 MTXDihydrofolate reductase 1.5.1.3 0.652
3mw0 BHRNickel-binding periplasmic protein / 0.650
4y9x UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.650