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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3uph 0C1 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3uph 0C1Genome polyprotein 2.7.7.48 1.074
3tyv HI3Genome polyprotein 2.7.7.48 0.970
3upi 0C2Genome polyprotein 2.7.7.48 0.967
3u4r 08FGenome polyprotein 2.7.7.48 0.876
2yoj 8Y6Genome polyprotein 2.7.7.48 0.857
3u4o 08EGenome polyprotein 2.7.7.48 0.851
3ska 053Genome polyprotein 2.7.7.48 0.849
3ske 054Genome polyprotein 2.7.7.48 0.824
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4mk9 28RGenome polyprotein 2.7.7.48 0.700
4mk8 28QGenome polyprotein 2.7.7.48 0.699
4mka 2AYGenome polyprotein 2.7.7.48 0.665
4e5f 0N7Polymerase acidic protein / 0.660