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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3uim ANP BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 2.7.10.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3uim ANPBRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 2.7.10.1 0.847
3b2t M33Fibroblast growth factor receptor 2 / 0.720
2itx ANPEpidermal growth factor receptor 2.7.10.1 0.714
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.700
2pvy ACPFibroblast growth factor receptor 2 / 0.695
4xhg ADPUncharacterized protein / 0.694
2qo9 ANPEphrin type-A receptor 3 2.7.10.1 0.688
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.684
4j98 ACPFibroblast growth factor receptor 2 / 0.684
4uya AGSMitogen-activated protein kinase kinase kinase 21 2.7.11.25 0.683
3nyn SGVG protein-coupled receptor kinase 6 2.7.11.16 0.677
4dca ADPAminoglycoside phosphotransferase / 0.676
2g2f AGSTyrosine-protein kinase ABL1 2.7.10.2 0.672
3pls ANPMacrophage-stimulating protein receptor 2.7.10.1 0.671
3c4x ATPRhodopsin kinase / 0.670
1fin ATPCyclin-dependent kinase 2 2.7.11.22 0.669
2eva ADNMitogen-activated protein kinase kinase kinase 7 2.7.11.25 0.669
4ckj ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.666
4n57 ADPAPH(2'')-Id / 0.666
3w0s ANPHygromycin-B 4-O-kinase 2.7.1.163 0.665
4s34 ANPMitogen-activated protein kinase 1 2.7.11.24 0.664
1h7u AGSMismatch repair endonuclease PMS2 3.1 0.663
2w5b AGSSerine/threonine-protein kinase Nek2 2.7.11.1 0.663
3q4z ANPSerine/threonine-protein kinase PAK 1 2.7.11.1 0.663
3w0r ANPHygromycin-B 4-O-kinase 2.7.1.163 0.663
4ix4 ADPUncharacterized protein / 0.663
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.661
4wh2 ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.661
3zo1 SIJcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.660
5ani ES4Cyclin-dependent kinase 2 2.7.11.22 0.660
1zy5 ANPeIF-2-alpha kinase GCN2 / 0.659
1jpa ANPEphrin type-B receptor 2 2.7.10.1 0.658
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.658
4c2w ANPAurora kinase B-A 2.7.11.1 0.658
2py3 ACPFibroblast growth factor receptor 2 / 0.657
4ix6 ADPUncharacterized protein / 0.657
5cu6 ATPCasein kinase II subunit alpha 2.7.11.1 0.657
1e1v CMGCyclin-dependent kinase 2 2.7.11.22 0.656
2pup ADPMethylthioribose kinase 2.7.1.100 0.656
3vjn ANPEpidermal growth factor receptor 2.7.10.1 0.656
4mv8 ACPBiotin carboxylase 6.3.4.14 0.655
2cch ATPCyclin-dependent kinase 2 2.7.11.22 0.654
4btj ATPTau-tubulin kinase 1 2.7.11.1 0.654
2pwl ACPFibroblast growth factor receptor 2 / 0.653
3k31 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.653
4y0x ADPSerine/threonine-protein kinase PknG 2.7.11.1 0.653
4fg8 ATPCalcium/calmodulin-dependent protein kinase type 1 2.7.11.17 0.652
5csh ATPCasein kinase II subunit alpha 2.7.11.1 0.652
1mq4 ADPAurora kinase A 2.7.11.1 0.651
4bl1 ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.651
4wh3 ATPN-acetylhexosamine 1-kinase 2.7.1.162 0.651
4wzy ATPMaltokinase 2.7.1.175 0.651
4fl1 ANPTyrosine-protein kinase SYK 2.7.10.2 0.650