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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3uhl 2NC Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3uhl 2NCGag-Pol polyprotein 3.4.23.16 1.355
3nwq 2NCGag-Pol polyprotein 3.4.23.16 0.767
3hzc 2NCProtease / 0.742
2avm 2NCGag-Pol polyprotein 3.4.23.16 0.727
1k1u 0Q4Gag-Pol polyprotein 3.4.23.16 0.720
2aoe 0Q4Gag-Pol polyprotein 3.4.23.16 0.718
3nxe 2NCProtease / 0.718
3nyg 2NCGag-Pol polyprotein 3.4.23.16 0.718
1ffi 2NCGag-Pol polyprotein 3.4.23.16 0.714
3bva 2NCGag-Pol polyprotein 3.4.23.16 0.696
3gi4 K60Gag-Pol polyprotein / 0.694
2i4v DJRV-1 protease / 0.691
1fej 2NCGag-Pol polyprotein 3.4.23.16 0.677
2qnp QN2Gag-Pol polyprotein 3.4.23.16 0.669
3sa9 A68Protease / 0.669
1b6p PI7Gag-Pol polyprotein 3.4.23.16 0.668
3eky DR7Gag-Pol polyprotein 3.4.23.16 0.664
1fgc 2NCGag-Pol polyprotein 3.4.23.16 0.663
1dw6 0Q4Gag-Pol polyprotein 3.4.23.16 0.660
3vf5 031Gag-Pol polyprotein 3.4.23.16 0.658
3qbh QBHBeta-secretase 1 3.4.23.46 0.655
2cem 2AHPol protein / 0.654
3ekw DR7Gag-Pol polyprotein 3.4.23.16 0.654
1daz 0Q4Gag-Pol polyprotein 3.4.23.16 0.653
3dck KVIProtease / 0.652
2qd8 065Gag-Pol polyprotein 3.4.23.16 0.651
3vfa 031Gag-Pol polyprotein 3.4.23.16 0.650