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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ufr H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.918
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.859
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.857
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.852
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.851
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.849
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.849
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.847
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.843
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.841
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.840
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.840
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.840
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.839
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.839
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.839
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.838
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.838
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.837
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.836
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.834
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.834
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.834
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.834
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.832
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.829
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.828
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.827
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.826
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.823
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.823
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.822
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.821
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.821
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.821
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.820
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.820
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.820
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.819
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.816
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.816
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.816
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.815
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.814
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.813
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.812
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.811
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.811
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.810
3png H4BNitric oxide synthase, brain 1.14.13.39 0.809
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.809
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.807
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.806
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.806
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.805
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.805
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.805
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.804
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.804
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.804
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.804
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.803
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.802
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.802
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.800
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.800
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.799
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.798
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.798
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.798
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.798
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.798
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.797
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.797
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.796
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.796
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.795
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.793
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.789
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.788
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.784
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.784
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.783
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.783
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.783
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.781
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.779
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.778
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.778
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.777
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.777
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.775
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.773
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.771
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.771
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.768
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.766
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.762
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.760
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.757
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.752
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.751
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.750
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.744
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.707
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.699
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.693
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.687
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.685
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.684
4uga H4BNitric oxide synthase oxygenase 1.14.13.165 0.679
3dwj H4BNitric oxide synthase, inducible 1.14.13.39 0.676
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.675
4e5f 0N7Polymerase acidic protein / 0.660