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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ufp H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.918
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.903
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.901
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.901
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.901
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.899
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.890
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.887
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.887
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.886
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.885
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.885
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.885
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.884
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.884
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.883
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.883
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.882
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.881
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.879
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.878
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.877
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.871
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.870
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.870
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.870
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.870
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.869
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.868
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.868
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.866
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.866
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.866
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.865
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.865
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.864
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.863
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.862
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.860
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.854
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.853
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.852
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.849
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.849
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.849
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.849
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.849
3png H4BNitric oxide synthase, brain 1.14.13.39 0.848
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.847
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.847
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.847
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.847
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.847
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.847
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.846
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.846
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.846
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.844
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.835
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.835
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.834
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.832
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.832
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.831
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.831
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.831
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.831
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.830
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.830
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.830
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.830
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.829
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.828
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.828
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.827
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.826
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.824
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.822
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.818
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.817
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.816
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.815
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.815
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.814
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.814
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.813
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.813
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.812
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.807
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.805
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.805
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.801
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.800
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.797
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.788
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.784
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.783
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.774
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.771
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.771
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.770
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.766
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.758
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.757
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.725
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.721
3nw2 H4BNitric oxide synthase, inducible 1.14.13.39 0.709
3dwj H4BNitric oxide synthase, inducible 1.14.13.39 0.689
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.688
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.686
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.684
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.671
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.669
3e7g H4BNitric oxide synthase, inducible 1.14.13.39 0.668
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.665
4e5f 0N7Polymerase acidic protein / 0.660
4uga H4BNitric oxide synthase oxygenase 1.14.13.165 0.659
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.657
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.655
3e67 H4BNitric oxide synthase, inducible 1.14.13.39 0.654