Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ufo HW4 Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ufo HW4Nitric oxide synthase, brain 1.14.13.39 1.000
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.873
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.865
3nlv 3XANitric oxide synthase, brain 1.14.13.39 0.858
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.854
3nlr JRSNitric oxide synthase, brain 1.14.13.39 0.848
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.839
3tym 08RNitric oxide synthase, brain 1.14.13.39 0.832
3nln JRSNitric oxide synthase, brain 1.14.13.39 0.821
3ufr H5WNitric oxide synthase, brain 1.14.13.39 0.821
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.820
3nlk JSSNitric oxide synthase, brain 1.14.13.39 0.814
3tyl AXWNitric oxide synthase, brain 1.14.13.39 0.813
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.804
3jws JI4Nitric oxide synthase, brain 1.14.13.39 0.787
3nnz 59WNitric oxide synthase, brain 1.14.13.39 0.786
3jx4 J11Nitric oxide synthase, brain 1.14.13.39 0.784
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.781
4k5d 1Q6Nitric oxide synthase, brain 1.14.13.39 0.777
3jwu J11Nitric oxide synthase, brain 1.14.13.39 0.760
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.760
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.758
4jse QJ2Nitric oxide synthase, brain 1.14.13.39 0.756
4jsg Q10Nitric oxide synthase, brain 1.14.13.39 0.755
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.750
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.750
4imw 1EVNitric oxide synthase, brain 1.14.13.39 0.748
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.747
4k5e 1Q7Nitric oxide synthase, brain 1.14.13.39 0.745
1drt PCVClavaminate synthase 1 1.14.11.21 0.744
4jsh Q15Nitric oxide synthase, brain 1.14.13.39 0.740
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.739
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.737
3n5v XFHNitric oxide synthase, brain 1.14.13.39 0.731
3dqr JI2Nitric oxide synthase, brain 1.14.13.39 0.727
3n5x XFKNitric oxide synthase, brain 1.14.13.39 0.727
3ufp H4WNitric oxide synthase, brain 1.14.13.39 0.726
3n5w XFJNitric oxide synthase, brain 1.14.13.39 0.723
3n63 XFNNitric oxide synthase, brain 1.14.13.39 0.713
3n66 XFNNitric oxide synthase, brain 1.14.13.39 0.712
3jx5 J14Nitric oxide synthase, brain 1.14.13.39 0.710
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.704
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.699
3n65 XFJNitric oxide synthase, brain 1.14.13.39 0.690
3n5z XFMNitric oxide synthase, brain 1.14.13.39 0.688
4k5f Q14Nitric oxide synthase, brain 1.14.13.39 0.683
4uga Q05Nitric oxide synthase oxygenase 1.14.13.165 0.680
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.677
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.674
3n5y XFLNitric oxide synthase, brain 1.14.13.39 0.670
3ufv HW9Nitric oxide synthase, brain 1.14.13.39 0.670
3e68 AT6Nitric oxide synthase, inducible 1.14.13.39 0.666
4fvz 4KJNitric oxide synthase, brain 1.14.13.39 0.655
2zhw 12UProthrombin 3.4.21.5 0.650