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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3uf6 COD Lmo1369 protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3uf6 CODLmo1369 protein / 0.999
4to5 TTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.662
2vxo XMPGMP synthase [glutamine-hydrolyzing] 6.3.5.2 0.659
4n3b 12VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit / 0.653
4fqf NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.650