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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3uel A1R Poly(ADP-ribose) glycohydrolase 3.2.1.143

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3uel A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 1.109
4na4 A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.943
4b1j A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.936
4b1h AR6Poly(ADP-ribose) glycohydrolase 3.2.1.143 0.921
4b1i A8PPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.892
3sig AR6Uncharacterized protein / 0.755
3sii A1RUncharacterized protein / 0.720
2fav APRNonstructural polyprotein pp1a / 0.656