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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ub5 ATP Actin, cytoplasmic 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ub5 ATPActin, cytoplasmic 1 / 0.936
3tu5 ATPActin, alpha skeletal muscle / 0.706
2p9k ATPActin-related protein 2 / 0.696
3w3d ATPActin, gamma-enteric smooth muscle / 0.695
1eqy ATPActin, alpha skeletal muscle / 0.689
3m6g ATPActin, alpha skeletal muscle / 0.688
1mdu ATPActin, alpha skeletal muscle / 0.678
5ce3 ATPActin / 0.677
4k41 ATPActin, alpha skeletal muscle / 0.675
3eku ATPActin-5C / 0.672
1s22 ATPActin, alpha skeletal muscle / 0.668
3mn9 ATPActin-5C / 0.667
1dej ATPMajor actin / 0.663
4b6u M7GEukaryotic translation initiation factor 4E type 3 / 0.659
2whq HI6Acetylcholinesterase 3.1.1.7 0.652