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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u8h BHP Phospholipase A2, membrane associated

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3u8h BHPPhospholipase A2, membrane associated / 1.273
1kvo OAPPhospholipase A2, membrane associated / 0.933
1kqu BR4Phospholipase A2, membrane associated / 0.784
5p2p DHGPhospholipase A2, major isoenzyme 3.1.1.4 0.713