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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u4r 08F Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3u4r 08FGenome polyprotein 2.7.7.48 1.054
3tyv HI3Genome polyprotein 2.7.7.48 0.903
3u4o 08EGenome polyprotein 2.7.7.48 0.891
3uph 0C1Genome polyprotein 2.7.7.48 0.876
3ska 053Genome polyprotein 2.7.7.48 0.847
3upi 0C2Genome polyprotein 2.7.7.48 0.830
3ske 054Genome polyprotein 2.7.7.48 0.823
2yoj 8Y6Genome polyprotein 2.7.7.48 0.808
4e5i 0N9Polymerase acidic protein / 0.744
4mk8 28QGenome polyprotein 2.7.7.48 0.736
3cvk N34Genome polyprotein 2.7.7.48 0.711
4ih6 1EPGenome polyprotein 2.7.7.48 0.691
4mka 2AYGenome polyprotein 2.7.7.48 0.686
3e51 N35Genome polyprotein 2.7.7.48 0.678
3h98 B5PGenome polyprotein 2.7.7.48 0.664
4eaw 0NQGenome polyprotein 2.7.7.48 0.663
4e5f 0N7Polymerase acidic protein / 0.660