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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u4l ATP Actin, cytoplasmic 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3u4l ATPActin, cytoplasmic 1 / 0.938
3m6g ATPActin, alpha skeletal muscle / 0.754
2v51 ATPActin, alpha skeletal muscle / 0.738
1dej ATPMajor actin / 0.722
4pkg ATPActin, alpha skeletal muscle / 0.722
3a5o ATPMajor actin / 0.712
3mn6 ATPActin-5C / 0.712
1h1v ATPActin, alpha skeletal muscle / 0.710
1wua ATPActin, alpha skeletal muscle / 0.705
4b1v ATPActin, alpha skeletal muscle / 0.703
3m1f ATPActin, alpha skeletal muscle / 0.697
1nlv ATPMajor actin / 0.691
4pki ATPActin, alpha skeletal muscle / 0.691
1nm1 ATPMajor actin / 0.689
3tu5 ATPActin, alpha skeletal muscle / 0.684
4k41 ATPActin, alpha skeletal muscle / 0.684
5ce3 ATPActin / 0.684
1s22 ATPActin, alpha skeletal muscle / 0.683
1eqy ATPActin, alpha skeletal muscle / 0.682
3chw ATPMajor actin / 0.682
4pl8 ATPActin, alpha skeletal muscle / 0.682
2oan ATPActin, cytoplasmic 1 / 0.680
1t44 ATPActin, alpha skeletal muscle / 0.679
3eku ATPActin-5C / 0.679
3ule ATPActin-related protein 2 / 0.678
3mn7 ATPActin-5C / 0.675
1kxp ATPActin, alpha skeletal muscle / 0.674
4loc BTNPyruvate carboxylase / 0.670
3eks ATPActin-5C / 0.669
2q97 ATPActin, alpha skeletal muscle / 0.668
1qz5 ATPActin, alpha skeletal muscle / 0.667
2a41 ATPActin, alpha skeletal muscle / 0.666
2p9k ATPActin-related protein 2 / 0.666
1ijj ATPActin, alpha skeletal muscle / 0.665
2q36 ATPActin, alpha skeletal muscle / 0.665
3daw ATPActin, alpha skeletal muscle / 0.664
2vcz VC3Hematopoietic prostaglandin D synthase / 0.662
3mn9 ATPActin-5C / 0.659
4cbx ATPActin-2 / 0.658
3el2 ATPActin-5C / 0.655
2yeg XQGHeat shock protein HSP 90-alpha / 0.654
4ci6 ATPActin / 0.654
3w3d ATPActin, gamma-enteric smooth muscle / 0.653
4iyg 1HUStrictosidine synthase 4.3.3.2 0.652
4o0u ADNAurora kinase A 2.7.11.1 0.652
4mfe BTNPyruvate carboxylase / 0.650