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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u2c SUZ Aldose reductase 1.1.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3u2c SUZAldose reductase 1.1.1.21 0.963
2ikj 393Aldose reductase 1.1.1.21 0.693
3m64 393Aldose reductase 1.1.1.21 0.688
2pdj 393Aldose reductase 1.1.1.21 0.675
2is7 2CLAldose reductase 1.1.1.21 0.673
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
4e5l DBHPolymerase acidic protein / 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.654
4e5f 0N7Polymerase acidic protein / 0.653
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.653
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.652
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.651
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.650