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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tym 08R Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3tym 08RNitric oxide synthase, brain 1.14.13.39 0.896
3tyl AXWNitric oxide synthase, brain 1.14.13.39 0.891
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.862
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.853
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.850
3nlk JSSNitric oxide synthase, brain 1.14.13.39 0.843
3nlv 3XANitric oxide synthase, brain 1.14.13.39 0.843
3nlr JRSNitric oxide synthase, brain 1.14.13.39 0.840
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.832
3ufo HW4Nitric oxide synthase, brain 1.14.13.39 0.832
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.830
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.817
3jws JI4Nitric oxide synthase, brain 1.14.13.39 0.815
3nln JRSNitric oxide synthase, brain 1.14.13.39 0.814
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.802
3ufr H5WNitric oxide synthase, brain 1.14.13.39 0.775
3jwu J11Nitric oxide synthase, brain 1.14.13.39 0.770
3jx4 J11Nitric oxide synthase, brain 1.14.13.39 0.769
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.763
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.760
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.758
4imw 1EVNitric oxide synthase, brain 1.14.13.39 0.755
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.753
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.752
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.751
4k5e 1Q7Nitric oxide synthase, brain 1.14.13.39 0.750
4k5d 1Q6Nitric oxide synthase, brain 1.14.13.39 0.748
4jse QJ2Nitric oxide synthase, brain 1.14.13.39 0.747
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.745
4jsg Q10Nitric oxide synthase, brain 1.14.13.39 0.745
1drt PCVClavaminate synthase 1 1.14.11.21 0.744
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.742
3n5z XFMNitric oxide synthase, brain 1.14.13.39 0.740
3n5y XFLNitric oxide synthase, brain 1.14.13.39 0.737
4jsh Q15Nitric oxide synthase, brain 1.14.13.39 0.737
3ufp H4WNitric oxide synthase, brain 1.14.13.39 0.736
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.732
3jx5 J14Nitric oxide synthase, brain 1.14.13.39 0.729
3n5v XFHNitric oxide synthase, brain 1.14.13.39 0.728
4k5f Q14Nitric oxide synthase, brain 1.14.13.39 0.722
3n5x XFKNitric oxide synthase, brain 1.14.13.39 0.718
3n66 XFNNitric oxide synthase, brain 1.14.13.39 0.716
3n5w XFJNitric oxide synthase, brain 1.14.13.39 0.714
3n65 XFJNitric oxide synthase, brain 1.14.13.39 0.712
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.711
3dqr JI2Nitric oxide synthase, brain 1.14.13.39 0.705
4lwa Q13Nitric oxide synthase oxygenase 1.14.13.165 0.700
3n63 XFNNitric oxide synthase, brain 1.14.13.39 0.697
3nlo JSRNitric oxide synthase, brain 1.14.13.39 0.695
3ufv HW9Nitric oxide synthase, brain 1.14.13.39 0.695
3n60 XFNNitric oxide synthase, brain 1.14.13.39 0.692
4cx4 HW9Nitric oxide synthase, brain 1.14.13.39 0.686
4gqe 6KJNitric oxide synthase, brain 1.14.13.39 0.678
4ug7 1EVNitric oxide synthase oxygenase 1.14.13.165 0.677
4uga Q05Nitric oxide synthase oxygenase 1.14.13.165 0.673
3nnz 59WNitric oxide synthase, brain 1.14.13.39 0.669
4ug5 XFKNitric oxide synthase oxygenase 1.14.13.165 0.667
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.666
4lwb QJ8Nitric oxide synthase oxygenase 1.14.13.165 0.663
2zhw 12UProthrombin 3.4.21.5 0.656