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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tsk QEG Macrophage metalloelastase 3.4.24.65

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3tsk QEGMacrophage metalloelastase 3.4.24.65 1.018
3lik EEGMacrophage metalloelastase 3.4.24.65 0.846
3ljg EEFMacrophage metalloelastase 3.4.24.65 0.787
3ts4 EEGMacrophage metalloelastase 3.4.24.65 0.773
4gr0 R4BMacrophage metalloelastase 3.4.24.65 0.718
4gr8 R4CMacrophage metalloelastase 3.4.24.65 0.705
4i03 L88Macrophage metalloelastase 3.4.24.65 0.699
1c8t TR1Stromelysin-1 3.4.24.17 0.691
4guy KLJMacrophage metalloelastase 3.4.24.65 0.689
2hu6 37AMacrophage metalloelastase 3.4.24.65 0.682
2woa 576Macrophage metalloelastase 3.4.24.65 0.677
1gkc NFHMatrix metalloproteinase-9 3.4.24.35 0.675
1hv5 RXPStromelysin-3 3.4.24 0.672
4gr3 R45Macrophage metalloelastase 3.4.24.65 0.668
1mnc PLHNeutrophil collagenase 3.4.24.34 0.651
1sln INHStromelysin-1 3.4.24.17 0.650