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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ts4 EEG Macrophage metalloelastase 3.4.24.65

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ts4 EEGMacrophage metalloelastase 3.4.24.65 1.049
4i03 L88Macrophage metalloelastase 3.4.24.65 0.807
3tsk QEGMacrophage metalloelastase 3.4.24.65 0.773
4h76 10BMacrophage metalloelastase 3.4.24.65 0.760
2woa 576Macrophage metalloelastase 3.4.24.65 0.702
2wo9 068Macrophage metalloelastase 3.4.24.65 0.693
3lik EEGMacrophage metalloelastase 3.4.24.65 0.679
2hu6 37AMacrophage metalloelastase 3.4.24.65 0.677
4gr0 R4BMacrophage metalloelastase 3.4.24.65 0.675
3kry 3KRCollagenase 3 3.4.24 0.671
4h30 0ZDMacrophage metalloelastase 3.4.24.65 0.656