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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ts1 TYA Tyrosine--tRNA ligase 6.1.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ts1 TYATyrosine--tRNA ligase 6.1.1.1 1.200
2pid YSATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.918
1vbm YSATyrosine--tRNA ligase 6.1.1.1 0.840
1jil 485Tyrosine--tRNA ligase / 0.827
1vbn YSATyrosine--tRNA ligase 6.1.1.1 0.821
1jik 545Tyrosine--tRNA ligase / 0.728
1nuq NXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.696
4clo NAPPteridine reductase / 0.676
2j5b TYETyrosine--tRNA ligase 6.1.1.1 0.674
1nuu NADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.671
3coy 53HPantothenate synthetase 6.3.2.1 0.663
3zxi TYATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.658