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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tqx PLP 2-amino-3-ketobutyrate coenzyme A ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3tqx PLP2-amino-3-ketobutyrate coenzyme A ligase / 0.901
2bwp PLG5-aminolevulinate synthase 2.3.1.37 0.727
3vax PLPUncharacterized protein / 0.702
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.685
4itx IN5Cystathionine beta-lyase MetC 4.4.1.8 0.681
1u08 PLPMethionine aminotransferase / 0.674
1arh PPDAspartate aminotransferase 2.6.1.1 0.667
1x28 PGUAspartate aminotransferase 2.6.1.1 0.665
1dfo PLGSerine hydroxymethyltransferase 2.1.2.1 0.664
2gqn BLPCystathionine beta-lyase MetC 4.4.1.8 0.662
3zrr PXGSerine-pyruvate aminotransferase (AgxT) / 0.661
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.661
2fq6 P3FCystathionine beta-lyase MetC 4.4.1.8 0.660
4ge4 0KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.659
1wkh PPE[LysW]-aminoadipate semialdehyde transaminase / 0.656