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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3to3 ATP Petrobactin biosynthesis protein AsbB

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3to3 ATPPetrobactin biosynthesis protein AsbB / 0.899
1rx5 DDFDihydrofolate reductase 1.5.1.3 0.662
1rx6 DDFDihydrofolate reductase 1.5.1.3 0.660
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.660
1uuo BRFDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.650
4g5q GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.650