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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tin ADP Ttl protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3tin ADPTtl protein / 0.834
3b2t M33Fibroblast growth factor receptor 2 / 0.677
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.673
4s34 ANPMitogen-activated protein kinase 1 2.7.11.24 0.663
4e5f 0N7Polymerase acidic protein / 0.660
4uya AGSMitogen-activated protein kinase kinase kinase 21 2.7.11.25 0.652
3pnl ADPPEP-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL 2.7 0.651
4mv4 ACPBiotin carboxylase 6.3.4.14 0.650
5jqw ADPN5-carboxyaminoimidazole ribonucleotide synthase / 0.650