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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ta0 ATP Nitrogen regulatory protein P-II (GlnB-3)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ta0 ATPNitrogen regulatory protein P-II (GlnB-3) / 0.993
4co4 ATPNitrogen regulatory protein P-II 1 / 0.780
3ncq ATPNitrogen regulatory protein P-II (GlnB-2) / 0.770
3mhy ATPNitrogen regulatory protein P-II 1 / 0.759
3ncr ADPNitrogen regulatory protein P-II (GlnB-2) / 0.736
3ta1 ADPNitrogen regulatory protein P-II (GlnB-3) / 0.713
2xul ATPNitrogen regulatory protein P-II / 0.696
2xzw ATPNitrogen regulatory protein P-II / 0.695
4ozn ATPAmmonium transporter / 0.694
1v9o ADPSignaling protein / 0.685
3vqx BLKPyrrolysine--tRNA ligase / 0.679
1s16 ANPDNA topoisomerase 4 subunit B / 0.668
4rx6 ATPNitrogen regulatory PII-like protein / 0.654
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.652
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.650