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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t8h UBS Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3t8h UBSThermolysin 3.4.24.27 1.056
3t87 UBZThermolysin 3.4.24.27 0.971
3t8d UBVThermolysin 3.4.24.27 0.961
3t74 UBYThermolysin 3.4.24.27 0.956
4d9w X32Thermolysin 3.4.24.27 0.932
4h57 0PJThermolysin 3.4.24.27 0.926
3t8c UBWThermolysin 3.4.24.27 0.917
3fv4 1U4Thermolysin 3.4.24.27 0.899
6tmn 0PIThermolysin 3.4.24.27 0.859
3fvp UB2Thermolysin 3.4.24.27 0.853
4tmn 0PKThermolysin 3.4.24.27 0.851
4b52 RDFBacillolysin / 0.785
4zr5 RDFNeprilysin / 0.759
3zuk RDFEndopeptidase, peptidase family M13 / 0.748
1u4g HPIElastase 3.4.24.26 0.732
3f28 S7BThermolysin 3.4.24.27 0.705
3fgd BYAThermolysin 3.4.24.27 0.692
1qf2 TI3Thermolysin 3.4.24.27 0.690
3dwb RDFEndothelin-converting enzyme 1 3.4.24.71 0.686
1r1i TI1Neprilysin / 0.675