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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t8d UBV Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3t8d UBVThermolysin 3.4.24.27 1.076
4d9w X32Thermolysin 3.4.24.27 1.009
4h57 0PJThermolysin 3.4.24.27 1.007
3t8c UBWThermolysin 3.4.24.27 0.992
3t74 UBYThermolysin 3.4.24.27 0.976
3t87 UBZThermolysin 3.4.24.27 0.976
3t8h UBSThermolysin 3.4.24.27 0.961
3fv4 1U4Thermolysin 3.4.24.27 0.944
4tmn 0PKThermolysin 3.4.24.27 0.876
3fvp UB2Thermolysin 3.4.24.27 0.863
6tmn 0PIThermolysin 3.4.24.27 0.842
4b52 RDFBacillolysin / 0.826
4cth RDFNeprilysin / 0.814
2tmn 0FAThermolysin 3.4.24.27 0.808
3zuk RDFEndopeptidase, peptidase family M13 / 0.786
4zr5 RDFNeprilysin / 0.782
1u4g HPIElastase 3.4.24.26 0.731
3fgd BYAThermolysin 3.4.24.27 0.694
1qf2 TI3Thermolysin 3.4.24.27 0.690
3f28 S7BThermolysin 3.4.24.27 0.677
3dwb RDFEndothelin-converting enzyme 1 3.4.24.71 0.670
1r1i TI1Neprilysin / 0.667