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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t8c UBW Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3t8c UBWThermolysin 3.4.24.27 1.089
4h57 0PJThermolysin 3.4.24.27 1.064
3t87 UBZThermolysin 3.4.24.27 1.027
4d9w X32Thermolysin 3.4.24.27 1.020
3t74 UBYThermolysin 3.4.24.27 1.010
3t8d UBVThermolysin 3.4.24.27 0.992
3fv4 1U4Thermolysin 3.4.24.27 0.922
3t8h UBSThermolysin 3.4.24.27 0.917
6tmn 0PIThermolysin 3.4.24.27 0.884
4tmn 0PKThermolysin 3.4.24.27 0.871
3fvp UB2Thermolysin 3.4.24.27 0.859
4b52 RDFBacillolysin / 0.844
2tmn 0FAThermolysin 3.4.24.27 0.839
4cth RDFNeprilysin / 0.798
4zr5 RDFNeprilysin / 0.788
3zuk RDFEndopeptidase, peptidase family M13 / 0.763
1u4g HPIElastase 3.4.24.26 0.737
1qf2 TI3Thermolysin 3.4.24.27 0.719
1r1j OIRNeprilysin / 0.714
3dwb RDFEndothelin-converting enzyme 1 3.4.24.71 0.699
3f28 S7BThermolysin 3.4.24.27 0.695
3fgd BYAThermolysin 3.4.24.27 0.679
1r1i TI1Neprilysin / 0.676
3f2p S3BThermolysin 3.4.24.27 0.671