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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t87 UBZ Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3t87 UBZThermolysin 3.4.24.27 1.103
3t74 UBYThermolysin 3.4.24.27 1.064
4d9w X32Thermolysin 3.4.24.27 1.036
3t8c UBWThermolysin 3.4.24.27 1.027
4h57 0PJThermolysin 3.4.24.27 1.021
3t8d UBVThermolysin 3.4.24.27 0.976
3t8h UBSThermolysin 3.4.24.27 0.971
4tmn 0PKThermolysin 3.4.24.27 0.924
3fv4 1U4Thermolysin 3.4.24.27 0.909
6tmn 0PIThermolysin 3.4.24.27 0.900
4b52 RDFBacillolysin / 0.873
3fvp UB2Thermolysin 3.4.24.27 0.844
2tmn 0FAThermolysin 3.4.24.27 0.822
3zuk RDFEndopeptidase, peptidase family M13 / 0.778
1u4g HPIElastase 3.4.24.26 0.752
3dwb RDFEndothelin-converting enzyme 1 3.4.24.71 0.699
1qf2 TI3Thermolysin 3.4.24.27 0.691
4zr5 RDFNeprilysin / 0.691
3f28 S7BThermolysin 3.4.24.27 0.679
1r1i TI1Neprilysin / 0.675
4cth RDFNeprilysin / 0.660
3fgd BYAThermolysin 3.4.24.27 0.656
3f2p S3BThermolysin 3.4.24.27 0.651