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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t74 UBY Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3t74 UBYThermolysin 3.4.24.27 1.089
3t87 UBZThermolysin 3.4.24.27 1.064
4d9w X32Thermolysin 3.4.24.27 1.011
3t8c UBWThermolysin 3.4.24.27 1.010
4h57 0PJThermolysin 3.4.24.27 1.004
3t8d UBVThermolysin 3.4.24.27 0.976
3fv4 1U4Thermolysin 3.4.24.27 0.958
3t8h UBSThermolysin 3.4.24.27 0.956
4tmn 0PKThermolysin 3.4.24.27 0.924
6tmn 0PIThermolysin 3.4.24.27 0.879
3fvp UB2Thermolysin 3.4.24.27 0.875
2tmn 0FAThermolysin 3.4.24.27 0.808
4b52 RDFBacillolysin / 0.808
4zr5 RDFNeprilysin / 0.784
4cth RDFNeprilysin / 0.782
3zuk RDFEndopeptidase, peptidase family M13 / 0.767
1u4g HPIElastase 3.4.24.26 0.744
1qf2 TI3Thermolysin 3.4.24.27 0.730
3dwb RDFEndothelin-converting enzyme 1 3.4.24.71 0.697
1r1j OIRNeprilysin / 0.692
1r1i TI1Neprilysin / 0.690
3f28 S7BThermolysin 3.4.24.27 0.689