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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t3i GPW Glycogen phosphorylase, muscle form 2.4.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3t3i GPWGlycogen phosphorylase, muscle form 2.4.1.1 1.100
4el5 D1MGlycogen phosphorylase, muscle form 2.4.1.1 0.885
3g2h KOTGlycogen phosphorylase, muscle form 2.4.1.1 0.796
3zcs CAWGlycogen phosphorylase, muscle form 2.4.1.1 0.778
3g2l LEWGlycogen phosphorylase, muscle form 2.4.1.1 0.772
4eke D1IGlycogen phosphorylase, muscle form 2.4.1.1 0.754
3mt8 17TGlycogen phosphorylase, muscle form 2.4.1.1 0.749
4el0 D1KGlycogen phosphorylase, muscle form 2.4.1.1 0.749
3ms4 21NGlycogen phosphorylase, muscle form 2.4.1.1 0.744
2qn7 HBZGlycogen phosphorylase, muscle form 2.4.1.1 0.742
2qrq S13Glycogen phosphorylase, muscle form 2.4.1.1 0.739
1k08 BZDGlycogen phosphorylase, muscle form 2.4.1.1 0.730
2g9v IFMGlycogen phosphorylase, muscle form 2.4.1.1 0.693
4gpb GFPGlycogen phosphorylase, muscle form 2.4.1.1 0.693
1i2c UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.691
5gpb GPMGlycogen phosphorylase, muscle form 2.4.1.1 0.659
3l7d DK5Glycogen phosphorylase, muscle form 2.4.1.1 0.652