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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t14 FAD Sulfide-quinone reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3t14 FADSulfide-quinone reductase / 1.206
3t2k FADSulfide-quinone reductase / 1.171
3syi FADSulfide-quinone reductase / 1.113
3kpk FADSulfide-quinone reductase / 1.111
3t2z FADSulfide-quinone reductase / 1.094
3sz0 FADSulfide-quinone reductase / 1.075
3t2y FADSulfide-quinone reductase / 0.985
4udr FAD5-(hydroxymethyl)furfural oxidase / 0.761
4hb9 FADUncharacterized protein / 0.758
3lzw FADFerredoxin--NADP reductase 2 1.18.1.2 0.750
2fjb SFDAdenylylsulfate reductase, subunit A (AprA) / 0.736
2hqm FADGlutathione reductase 1.8.1.7 0.736
2fjd SFDAdenylylsulfate reductase, subunit A (AprA) / 0.732
1m6i FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.725
1rp0 AHZThiamine thiazole synthase, chloroplastic / 0.725
1e6e FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.722
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.720
3rha FDAPutrescine oxidase / 0.716
2ign FADPyranose 2-oxidase / 0.714
1jnz FADAdenylylsulfate reductase, subunit A (AprA) / 0.713
3ict FADCoenzyme A disulfide reductase / 0.713
4b68 FADL-ornithine N(5)-monooxygenase / 0.713
4x4j FADPutative oxygenase / 0.707
1tyt FADTrypanothione reductase 1.8.1.12 0.706
2xve FADPutative flavin-containing monooxygenase / 0.705
1cc2 FADCholesterol oxidase 1.1.3.6 0.704
2eq6 FADDihydrolipoyl dehydrogenase / 0.703
2gr0 FADFerredoxin reductase / 0.700
3b6d FAECholesterol oxidase 1.1.3.6 0.700
1ijh FADCholesterol oxidase 1.1.3.6 0.699
1n4w FADCholesterol oxidase 1.1.3.6 0.699
2gew FADCholesterol oxidase 1.1.3.6 0.699
3gyi FADCholesterol oxidase 1.1.3.6 0.699
1f3p FADFerredoxin reductase / 0.697
3kpf FADPolyamine oxidase 1.5.3.14 0.697
3lzx FADFerredoxin--NADP reductase 2 1.18.1.2 0.697
2zbw FADFerredoxin--NADP reductase / 0.696
4ynt FDAGlucose oxidase, putative / 0.696
1n4u FAECholesterol oxidase 1.1.3.6 0.695
4u2l SFDCholesterol oxidase 1.1.3.6 0.695
4xxg FADCholesterol oxidase 1.1.3.6 0.695
2vqb FADPutative flavin-containing monooxygenase / 0.694
2xlp FADPutative flavin-containing monooxygenase / 0.694
3ics FADCoenzyme A disulfide reductase / 0.694
3cgb FADCoenzyme A disulfide reductase / 0.693
1e1k FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.692
1ger FADGlutathione reductase 1.8.1.7 0.692
1yqz FADCoenzyme A disulfide reductase / 0.692
3bg7 FADPyranose 2-oxidase / 0.692
3cgd FADCoenzyme A disulfide reductase / 0.692
1pdh FASp-hydroxybenzoate hydroxylase / 0.691
3gwd FADCyclohexanone monooxygenase / 0.691
3nt6 FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.690
4la1 FADThioredoxin glutathione reductase / 0.690
3f8r NAPNADH oxidase/thioredoxin reductase / 0.689
3uth FDAUDP-galactopyranose mutase / 0.688
4wx1 FDAUDP-galactopyranose mutase / 0.688
2c7g FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.687
3uox FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.687
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.686
2yqu FADDihydrolipoyl dehydrogenase / 0.686
4dsh FDAUncharacterized protein / 0.686
1d4d FADFumarate reductase flavoprotein subunit 1.3.5.4 0.685
3awi FADtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 1.5 0.685
4u8o FDAUDP-galactopyranose mutase / 0.685
3up5 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.684
4qi4 FADCellobiose dehydrogenase / 0.683
1mo9 FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.682
2jk6 FADTrypanothione reductase / 0.682
4b1b FADThioredoxin reductase 1.8.1.9 0.681
4z26 FADPutative GMC-type oxidoreductase R135 1 0.681
2ylt FADPhenylacetone monooxygenase 1.14.13.92 0.680
3pl8 FADPyranose 2-oxidase / 0.680
4eqw FADCoenzyme A disulfide reductase / 0.680
4u2t FADCholesterol oxidase 1.1.3.6 0.679
3cge FADCoenzyme A disulfide reductase / 0.678
4cy8 FDA2-hydroxybiphenyl-3-monooxygenase / 0.678
4tm4 FDAKtzI / 0.678
3ish FADThioredoxin reductase 1.8.1.9 0.676
3lxd FADFAD-dependent pyridine nucleotide-disulfide oxidoreductase / 0.676
4g6h FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.676
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.676
4tm0 FADKtzI / 0.676
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.675
4b65 FADL-ornithine N(5)-monooxygenase / 0.674
3fg2 FADPutative rubredoxin reductase / 0.673
3uoy FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.673
3f8p NADNADH oxidase/thioredoxin reductase / 0.672
4em4 FADCoenzyme A disulfide reductase / 0.672
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.671
2x8g FADThioredoxin glutathione reductase / 0.671
4nte FADDepH / 0.671
4bur FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.670
5cku FADL-ornithine N(5)-monooxygenase / 0.670
5hhf FDAUDP-galactopyranose mutase / 0.669
1cjc FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.668
2cul FADGidA-related protein / 0.668
3g5s FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.668
3icr FADCoenzyme A disulfide reductase / 0.668
4dsg FADUncharacterized protein / 0.668
4bv6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.667
2bra FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.666
2nvk FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.666
1e1n FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.665
3k30 ADPHistamine dehydrogenase / 0.665
4xwr FADCholesterol oxidase 1.1.3.6 0.665
3ukk FDAUDP-galactopyranose mutase / 0.664
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.664
2v3a FADRubredoxin-NAD(+) reductase 1.18.1.1 0.663
2yr4 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.663
2zzc FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.663
1lqu FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.662
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.662
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.661
2x8h FADThioredoxin glutathione reductase / 0.661
4a99 FADTetX family tetracycline inactivation enzyme / 0.661
2vou FAD2,6-dihydroxypyridine 3-monooxygenase 1.14.13.10 0.660
5fs6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.660
3kkj FADRenalase / 0.659
1w4x FADPhenylacetone monooxygenase 1.14.13.92 0.658
3cnj FADCholesterol oxidase 1.1.3.6 0.658
3mj4 FADUDP-galactopyranose mutase / 0.657
3g5q FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.656
1y56 ATPUncharacterized protein / 0.654
3up4 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.654
3bi2 FADPolyamine oxidase FMS1 / 0.652
3ntd FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.652
3uov FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.652
4b66 FADL-ornithine N(5)-monooxygenase / 0.652
4gdp FADPolyamine oxidase FMS1 / 0.652
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.651
2whd FADThioredoxin reductase / 0.650
4eqs FADCoenzyme A disulfide reductase / 0.650
4yry FADGlutamate synthase, beta subunit / 0.650