sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3sxn | COA | N-acetyltransferase Eis |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3sxn | COA | N-acetyltransferase Eis | / | 1.336 | |
| 3r1k | COA | N-acetyltransferase Eis | / | 0.992 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.782 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.757 | |
| 2vbq | BSJ | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.754 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.743 | |
| 2x7b | COA | N-alpha-acetyltransferase | 2.3.1 | 0.739 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.739 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.738 | |
| 1m4d | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.732 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.730 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.728 | |
| 1qsn | COA | HAT A1 | / | 0.725 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.723 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.723 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.722 | |
| 3ryo | ACO | N-acetyltransferase Eis | / | 0.720 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.717 | |
| 1cm0 | COA | Histone acetyltransferase KAT2B | 2.3.1.48 | 0.712 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.708 | |
| 3fbu | COA | Acetyltransferase, GNAT family | / | 0.705 | |
| 1pu9 | COA | HAT A1 | / | 0.704 | |
| 3r96 | ACO | MccE protein | / | 0.704 | |
| 3gy9 | COA | GCN5-related N-acetyltransferase | / | 0.693 | |
| 3q33 | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.691 | |
| 3r95 | ACO | MccE protein | / | 0.684 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.682 | |
| 5kf8 | COA | Predicted acetyltransferase | / | 0.681 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.680 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.678 | |
| 1kuy | COT | Serotonin N-acetyltransferase | / | 0.673 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.673 | |
| 3gya | COA | GCN5-related N-acetyltransferase | / | 0.672 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.671 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.666 | |
| 2zw5 | COA | Bleomycin acetyltransferase | / | 0.666 | |
| 4qvt | ACO | Acetyltransferase YpeA | 2.3.1 | 0.666 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.665 | |
| 1kux | CA3 | Serotonin N-acetyltransferase | / | 0.664 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.664 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.663 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.662 | |
| 3bj7 | COA | Diamine acetyltransferase 1 | / | 0.660 | |
| 4crz | ACO | PanD regulatory factor | / | 0.659 | |
| 5c88 | COA | N-alpha-acetyltransferase | / | 0.658 | |
| 3dr8 | ACO | L-methionine sulfoximine/L-methionine sulfone acetyltransferase | / | 0.654 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.652 | |
| 4u9z | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.650 |