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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3sw1 FMN Sensory box protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3sw1 FMNSensory box protein / 1.439
5j3w FMNSensory box protein / 1.001
4ees FMNPhototropin-2 2.7.11.1 0.945
4eet FMNPhototropin-2 2.7.11.1 0.938
4eeu FMNPhototropin-2 2.7.11.1 0.925
4hj6 FMNLOV protein / 0.925
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.895
3hji FADVivid PAS protein VVD / 0.888
2pd8 FADVivid PAS protein VVD / 0.871
2pd7 FADVivid PAS protein VVD / 0.866
3hjk FADVivid PAS protein VVD / 0.865
4eep FMNPhototropin-2 2.7.11.1 0.865
2z6c FMNPhototropin-1 2.7.11.1 0.852
4hj3 FMNLOV protein / 0.851
1n9n FMNPutative blue light receptor / 0.844
4eer FMNPhototropin-2 2.7.11.1 0.837
5dju FMNNPH1-2 / 0.829
5djt FMNNPH1-2 / 0.813
2pr5 FMNBlue-light photoreceptor / 0.812
5j4e FMNSensory box protein / 0.809
4kuo RBFPutative blue-light photoreceptor / 0.799
2z6d FMNPhototropin-2 2.7.11.1 0.795
3is2 FADVivid PAS protein VVD / 0.784
5efw FMNNPH1-1 / 0.778
2v0u FMNNPH1-1 / 0.773
2v1a FMNNPH1-1 / 0.769
1g28 FMNPHY3 / 0.768
3d72 FADVivid PAS protein VVD / 0.761
4kuk RBFPutative blue-light photoreceptor / 0.757
3p7n FMNLight-activated DNA-binding protein EL222 / 0.749
4hia FMNLOV protein / 0.745
3ue6 FMNAureochrome1 / 0.744
2pdt FADVivid PAS protein VVD / 0.742
1n9l FMNPutative blue light receptor / 0.737
4hnb FMNLOV protein / 0.735
4r3a RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.723
4wf0 FMNNPH1-1 / 0.720
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.709
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.691
4hj4 FMNLOV protein / 0.688
1x31 FMNSubunit alpha of sarocosine oxidase / 0.663
1x31 FMNSubunit beta of sarcosine oxidase / 0.663
1gal FADGlucose oxidase 1.1.3.4 0.662
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.660
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.657
1m9n AMZBifunctional purine biosynthesis protein PURH 2.1.2.3 0.654
4cnz ADPNitrogen regulatory protein P-II 1 / 0.654
4hhd FMNPhototropin-1 2.7.11.1 0.651
2iw5 FADLysine-specific histone demethylase 1A 1 0.650