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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3srz UPG Toxin A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3srz UPGToxin A / 1.246
2vkd UPGCytotoxin L / 0.997
3jsz UPGUncharacterized protein / 0.741
2wzg UPGUncharacterized protein / 0.720
5c1g GDUHisto-blood group ABO system transferase / 0.703
4pd6 URINucleoside permease / 0.666
1ga8 UPFLgtC / 0.661
1ss9 UPFLgtC / 0.660
5c4f UPGHisto-blood group ABO system transferase / 0.659
5c4c UPGHisto-blood group ABO system transferase / 0.657
1g9r UPFLgtC / 0.655
1zdf UPGGlycogenin-1 2.4.1.186 0.654
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.652
3vil SA0Beta-glucosidase / 0.652