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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3slk NDP Polyketide synthase extender module 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3slk NDPPolyketide synthase extender module 2 / 1.223
4rvu NDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein) / 0.755
4hfm NAP2-alkenal reductase (NADP(+)-dependent) / 0.747
1qor NDPQuinone oxidoreductase 1 / 0.732
1yb5 NAPQuinone oxidoreductase 1.6.5.5 0.693
3qwb NDPProbable quinone oxidoreductase 1.6.5.5 0.689
3tqh NDPQuinone oxidoreductase / 0.688
3jyn NDPQuinone oxidoreductase / 0.684
5doz NDPJamJ / 0.682
2zb3 NDPProstaglandin reductase 2 1.3.1.48 0.677
1guf NDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial 1.3.1.10 0.673
2y05 NAPProstaglandin reductase 1 / 0.672
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.669
2j8z NAPQuinone oxidoreductase PIG3 1 0.668
1lua NAPBifunctional protein MdtA 1.5.1.5 0.658
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.657
1v9n NDPMalate dehydrogenase 1.1.1.37 0.653
5eio NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.653