Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3sii A1R Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3sii A1RUncharacterized protein / 1.056
3sig AR6Uncharacterized protein / 1.000
4na4 A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.841
4b1h AR6Poly(ADP-ribose) glycohydrolase 3.2.1.143 0.800
4b1i A8PPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.793
4b1j A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.777
5fsy AR6Uncharacterized protein / 0.767
2bfq AR6[Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2 0.758
3uel A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.720
3iif APRCore histone macro-H2A.1 / 0.702
3gqo APRNon-structural polyprotein / 0.693
5cms APRO-acetyl-ADP-ribose deacetylase / 0.672
4abk AR6Poly [ADP-ribose] polymerase 14 2.4.2.30 0.665
4j5r A1RO-acetyl-ADP-ribose deacetylase 1 3.5.1 0.652
5cb3 APRO-acetyl-ADP-ribose deacetylase / 0.651