Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3sig AR6 Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3sig AR6Uncharacterized protein / 1.223
3sii A1RUncharacterized protein / 1.000
4b1h AR6Poly(ADP-ribose) glycohydrolase 3.2.1.143 0.956
4na4 A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.865
5fsy AR6Uncharacterized protein / 0.845
2bfq AR6[Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2 0.835
5cb3 APRO-acetyl-ADP-ribose deacetylase / 0.807
2fav APRNonstructural polyprotein pp1a / 0.764
3uel A1RPoly(ADP-ribose) glycohydrolase 3.2.1.143 0.755
3ewr APRReplicase polyprotein 1a 3.4.22 0.742
3gqo APRNon-structural polyprotein / 0.728
4j5r A1RO-acetyl-ADP-ribose deacetylase 1 3.5.1 0.688
5cms APRO-acetyl-ADP-ribose deacetylase / 0.657
3iif APRCore histone macro-H2A.1 / 0.655