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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3sbh E65 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.889
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.825
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.817
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.815
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.815
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.806
1okm SABCarbonic anhydrase 2 4.2.1.1 0.801
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.795
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.791
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.790
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.782
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.780
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.771
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.771
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.768
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.767
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.766
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.765
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.765
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.764
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.762
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.758
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.757
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.757
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.757
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.755
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.753
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.752
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.752
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.751
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.749
1okn STBCarbonic anhydrase 2 4.2.1.1 0.747
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.744
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.743
3mho J43Carbonic anhydrase 2 4.2.1.1 0.742
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.741
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.740
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.740
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.739
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.737
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.737
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.736
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.734
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.732
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.731
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.729
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.728
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.726
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.725
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.724
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.724
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.721
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.721
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.721
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.720
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.720
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.717
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.717
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.714
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.714
4uov AZMCarbonate dehydratase / 0.712
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.710
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.707
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.705
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.704
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.703
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.703
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.701
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.700
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.698
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.698
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.697
4xiw AZMCarbonic anhydrase, alpha type / 0.697
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.696
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.695
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.695
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.694
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.694
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.693
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.693
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.692
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.692
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.688
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.684
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.683
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.682
3f7b AG5Carbonic anhydrase 4 4.2.1.1 0.681
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.681
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.680
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.678
3da2 4MDCarbonic anhydrase 13 4.2.1.1 0.678
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.674
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.673
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.673
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.670
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.667
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.667
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.666
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.665
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.656
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.654
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.651