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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3s2v 3HU Glutamate receptor ionotropic, kainate 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 1.092
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.817
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.816
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.816
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.785
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 0.781
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.759
3h03 UBPGlutamate receptor 2 / 0.736
1fw0 KAIGlutamate receptor 2 / 0.726
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.725
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 0.724
2qs4 LY5Glutamate receptor ionotropic, kainate 1 / 0.723
3rt8 CWDGlutamate receptor 3 / 0.715
3h06 VBPGlutamate receptor 2 / 0.713
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.704
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.698
3kfm KAIGlutamate receptor 4 / 0.698
4f3g KAIGlutamate receptor 3 / 0.689
4f31 KAIGlutamate receptor 3 / 0.686
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.684
1lbb KAIGlutamate receptor 2 / 0.683
3tza TZGGlutamate receptor 2 / 0.680
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.676
3sxj SAMPutative methyltransferase / 0.669
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.659
4ax8 SAMO-antigen chain terminator bifunctional methyltransferase/kinase WbdD / 0.658
1ci7 UMPThymidylate synthase 2.1.1.45 0.654