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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ryo ACO N-acetyltransferase Eis

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ryo ACON-acetyltransferase Eis / 1.167
3r1k COAN-acetyltransferase Eis / 0.800
3sxn COAN-acetyltransferase Eis / 0.720
1j4j ACOAcetyltransferase 2.3.1 0.689
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.679
3mgd ACOPredicted acetyltransferase / 0.676
2r8v ACOAmino-acid acetyltransferase / 0.673
1ib1 COTSerotonin N-acetyltransferase / 0.669
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.668
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.657
1cjw COTSerotonin N-acetyltransferase / 0.656
1kuy COTSerotonin N-acetyltransferase / 0.656
1wwz ACOUncharacterized protein / 0.655
4r3k COAN-alpha-acetyltransferase 2.3.1 0.651
1l0c COTSerotonin N-acetyltransferase / 0.650