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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ryk TYD dTDP-4-dehydrorhamnose 3,5-epimerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ryk TYDdTDP-4-dehydrorhamnose 3,5-epimerase / 0.850
2jj8 AZZDeoxynucleoside kinase / 0.670
2b8t THMThymidine kinase / 0.668
2uz3 TTPThymidine kinase / 0.661
5fuv THMThymidine kinase, putative / 0.661
1n5i TMPThymidylate kinase 2.7.4.9 0.660
5fuw THMThymidine kinase, putative / 0.660
1p72 THMThymidine kinase / 0.654