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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ry2 BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ry2 BTNStreptavidin / 1.066
1mk5 BTNStreptavidin / 1.061
2y3f BTNStreptavidin / 1.045
3wyq BTNStreptavidin / 1.045
2izf BTNStreptavidin / 1.043
1nqm BTNStreptavidin / 1.042
3wyp BSOStreptavidin / 1.034
1swe BTNStreptavidin / 1.027
2izi BTNStreptavidin / 1.026
2izh BTNStreptavidin / 1.025
2rtg BTNStreptavidin / 1.023
4gda BTNStreptavidin / 1.023
2izg BTNStreptavidin / 1.008
2rtd BTNStreptavidin / 1.002
2rtf BTNStreptavidin / 1.002
4yvb BTNStreptavidin / 1.000
2izj BTNStreptavidin / 0.999
1n43 BTNStreptavidin / 0.998
1n9m BTNStreptavidin / 0.994
1luq BTNStreptavidin / 0.990
2zsc BTNTamavidin2 / 0.986
2rte BTNStreptavidin / 0.985
3wzn BTNStreptavidin / 0.984
1i9h BNIStreptavidin / 0.975
4gd9 BTNStreptavidin / 0.975
1df8 BTNStreptavidin / 0.971
3rdo BTNStreptavidin / 0.968
4bx7 B4FStreptavidin / 0.953
1ndj BTNStreptavidin / 0.950
3rdq DTBStreptavidin / 0.949
4dne DTBStreptavidin / 0.948
1stp BTNStreptavidin / 0.934
4z28 BTNHoefavidin / 0.934
1mep BTNStreptavidin / 0.932
1swg BTNStreptavidin / 0.920
1lcw SHMStreptavidin / 0.913
1swr BTNStreptavidin / 0.913
2izl IMIStreptavidin / 0.913
2uyw BTNAvd protein / 0.900
1lcz BH7Streptavidin / 0.898
1rxj BNIStreptavidin / 0.892
1nc9 IMIStreptavidin / 0.881
2rtr IMIStreptavidin / 0.881
1swt BTNStreptavidin / 0.873
4bcs BTNAvidin-related protein 4/5 / 0.872
1y52 BTNAvidin-related protein 4/5 / 0.867
2fhn BNIAvidin-related protein 4/5 / 0.867
2rtp IMIStreptavidin / 0.862
1rxh BNIStreptavidin / 0.860
2rtq IMIStreptavidin / 0.857
2fhl BNIAvidin-related protein 4/5 / 0.855
1swp BTNStreptavidin / 0.854
3ew2 BTNHypothetical conserved protein / 0.845
3t2w BTNAvidin/streptavidin / 0.843
2rtm IMIStreptavidin / 0.832
4bj8 BTNAvidin / 0.823
2c4i BTNAvidin / 0.813
2rtn IMIStreptavidin / 0.813
2rto IMIStreptavidin / 0.808
3vhi VHIAvidin / 0.804
1swn BTNStreptavidin / 0.794
3vgw NVZAvidin / 0.792
2jgs BTNAvidin / 0.771
1swd BTNStreptavidin / 0.750
2uz2 BTNAvd protein / 0.734
2avi BTNAvidin / 0.701
3vhh VHHAvidin / 0.700
2rtl IMIStreptavidin / 0.694
1avd BTNAvidin / 0.689
3vhm NPKAvidin / 0.678
1ldq SHMAvidin / 0.658