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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rup ADP Biotin carboxylase 6.3.4.14

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rup ADPBiotin carboxylase 6.3.4.14 1.013
3rv3 ADPBiotin carboxylase 6.3.4.14 0.913
1wur 8DGGTP cyclohydrolase 1 / 0.686
4to3 DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.675
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.670
1n9n FMNPutative blue light receptor / 0.665
2zxu DSTtRNA dimethylallyltransferase 2.5.1.75 0.664
4df2 FMNNADPH dehydrogenase / 0.656
2gbl ATPCircadian clock protein kinase KaiC 2.7.11.1 0.654
4gcm NAPThioredoxin reductase 1.8.1.9 0.652