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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ruh UD6 UDP-N-acetylglucosamine 4-epimerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ruh UD6UDP-N-acetylglucosamine 4-epimerase / 1.294
1sb8 UD2WbpP / 0.865
3lu1 UD2UDP-N-acetylglucosamine 4-epimerase / 0.837
3ruc UD2UDP-N-acetylglucosamine 4-epimerase / 0.807
1sb9 UPGWbpP / 0.727
2gn4 UD1UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.698
2c5e GDDGDP-mannose 3,5-epimerase 5.1.3.18 0.682
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 0.667
4zrn UPGUDP-glucose 4-epimerase, putative / 0.665
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 0.660
1wvg CXYCDP-glucose 4,6-dehydratase 4.2.1.45 0.655
1pr9 NAPL-xylulose reductase 1.1.1.10 0.650