sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3rs4 | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3rs4 | GNP | GTPase HRas | / | 1.241 | |
| 3rs5 | GNP | GTPase HRas | / | 1.238 | |
| 3rs7 | GNP | GTPase HRas | / | 1.238 | |
| 4dlz | GNP | GTPase HRas | / | 1.235 | |
| 4dlx | GNP | GTPase HRas | / | 1.234 | |
| 4dlt | GNP | GTPase HRas | / | 1.219 | |
| 3rs0 | GNP | GTPase HRas | / | 1.218 | |
| 3rsl | GNP | GTPase HRas | / | 1.218 | |
| 4dlv | GNP | GTPase HRas | / | 1.218 | |
| 2rgc | GNP | GTPase HRas | / | 1.216 | |
| 4l9w | GNP | GTPase HRas | / | 1.216 | |
| 3k8y | GNP | GTPase HRas | / | 1.215 | |
| 3l8y | GNP | GTPase HRas | / | 1.215 | |
| 3lbn | GNP | GTPase HRas | / | 1.215 | |
| 3i3s | GNP | GTPase HRas | / | 1.205 | |
| 3v4f | GNP | GTPase HRas | / | 1.203 | |
| 4dlw | GNP | GTPase HRas | / | 1.201 | |
| 5b2z | GNP | GTPase HRas | / | 1.201 | |
| 3oiw | GNP | GTPase HRas | / | 1.196 | |
| 4g0n | GNP | GTPase HRas | / | 1.190 | |
| 3oiu | GNP | GTPase HRas | / | 1.185 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.182 | |
| 4dls | GNP | GTPase HRas | / | 1.181 | |
| 3oiv | GNP | GTPase HRas | / | 1.180 | |
| 2rge | GNP | GTPase HRas | / | 1.175 | |
| 3lbi | GNP | GTPase HRas | / | 1.169 | |
| 2rgb | GNP | GTPase HRas | / | 1.167 | |
| 3lbh | GNP | GTPase HRas | / | 1.167 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.167 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.165 | |
| 2c5l | GTP | GTPase HRas | / | 1.162 | |
| 4dsn | GCP | GTPase KRas | / | 1.148 | |
| 4nyj | GNP | GTPase HRas | / | 1.148 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.136 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.136 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.124 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.116 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.112 | |
| 3k9l | GNP | GTPase HRas | / | 1.112 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.107 | |
| 4k81 | GTP | GTPase HRas | / | 1.103 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.100 | |
| 4nyi | GNP | GTPase HRas | / | 1.098 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.087 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.080 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.078 | |
| 4dso | GSP | GTPase KRas | / | 1.071 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.070 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.068 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.052 | |
| 2rgg | GNP | GTPase HRas | / | 1.051 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.050 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.050 | |
| 3tgp | GNP | GTPase HRas | / | 1.045 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.043 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.041 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.039 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.038 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.036 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.033 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.031 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.030 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.029 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 1.028 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.020 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.018 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 1.017 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.017 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.016 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.009 | |
| 4mit | GTP | Rho-related protein racC | / | 1.009 | |
| 4xvq | GNP | GTPase HRas | / | 1.008 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.998 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.993 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.992 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.992 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.990 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.989 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.987 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.983 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.982 | |
| 3kud | GDP | GTPase HRas | / | 0.980 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.979 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.978 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.972 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.972 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.968 | |
| 3ddc | GNP | GTPase HRas | / | 0.968 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.966 | |
| 2ce2 | GDP | GTPase HRas | / | 0.966 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.966 | |
| 4ql3 | GDP | GTPase KRas | / | 0.964 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.963 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.963 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.962 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.961 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.958 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.955 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.954 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.954 | |
| 2cl6 | CAG | GTPase HRas | / | 0.952 | |
| 4l9s | GDP | GTPase HRas | / | 0.951 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.950 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.948 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.946 | |
| 4wa7 | GDP | GTPase KRas | / | 0.946 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.945 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.942 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.941 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.938 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.937 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.934 | |
| 4lv6 | GDP | GTPase KRas | / | 0.932 | |
| 4epw | GDP | GTPase KRas | / | 0.929 | |
| 4q02 | GDP | GTPase KRas | / | 0.929 | |
| 4tq9 | GDP | GTPase KRas | / | 0.929 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.925 | |
| 4epx | GDP | GTPase KRas | / | 0.925 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.924 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.923 | |
| 3r9x | GNP | GTPase Era | / | 0.923 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.923 | |
| 1lfd | GNP | GTPase HRas | / | 0.922 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.922 | |
| 4l8g | GDP | GTPase KRas | / | 0.922 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.920 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.918 | |
| 4dsu | GDP | GTPase KRas | / | 0.918 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.917 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.917 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.917 | |
| 4xvr | GNP | GTPase HRas | / | 0.916 | |
| 4dvg | GSP | Rho family GTPase | / | 0.915 | |
| 4q03 | GDP | GTPase KRas | / | 0.915 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.914 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.914 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.914 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.913 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.913 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.903 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.902 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.902 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.902 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.900 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.899 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.895 | |
| 4ldj | GDP | GTPase KRas | / | 0.895 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.891 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.888 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.886 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.884 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.884 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.880 | |
| 4obe | GDP | GTPase KRas | / | 0.880 | |
| 4lpk | GDP | GTPase KRas | / | 0.876 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.875 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.872 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.871 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.867 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.864 | |
| 4luc | GDP | GTPase KRas | / | 0.864 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.863 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.863 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.861 | |
| 3ref | GDP | Rho family GTPase | / | 0.860 | |
| 4lrw | GDP | GTPase KRas | / | 0.860 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.858 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.858 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.857 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.855 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.855 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.854 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.853 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.849 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.849 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.847 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.846 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.845 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.842 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.842 | |
| 3ftq | GNP | Septin-2 | / | 0.842 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.840 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.837 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.837 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.837 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.837 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.836 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.836 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.835 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.835 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.834 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.833 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.833 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.831 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.827 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.826 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.826 | |
| 4db1 | ANP | Myosin-7 | / | 0.825 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.823 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.822 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.821 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.816 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.816 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.816 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.815 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.814 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.812 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.810 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.805 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.804 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.802 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.799 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.798 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.798 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.796 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.795 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.795 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.795 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.795 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.794 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.793 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.793 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.793 | |
| 5bn3 | ADP | NEQ263 | / | 0.793 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.792 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.792 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.791 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.790 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.790 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.789 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.787 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.787 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.786 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.784 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.782 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.779 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.779 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.777 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.772 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.771 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.770 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.770 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.770 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.770 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.769 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.769 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.769 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.769 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.769 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.768 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.767 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.766 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.765 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.762 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.762 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.761 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.761 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.759 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.758 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.757 | |
| 2fna | ADP | Uncharacterized protein | / | 0.756 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.756 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.756 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.755 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.755 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.755 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.754 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.752 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.752 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.751 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.751 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.750 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.750 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.750 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.750 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.749 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.748 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.746 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.745 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.745 | |
| 4yqf | GDP | Septin-9 | / | 0.745 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.742 | |
| 1ank | ANP | Adenylate kinase | / | 0.740 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.740 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.739 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.738 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.737 | |
| 1xms | ANP | Protein RecA | / | 0.737 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.737 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.736 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.735 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.735 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.735 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.735 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.734 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.733 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.733 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.732 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.732 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.732 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.731 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.731 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.730 | |
| 4c30 | ANP | DNA helicase | / | 0.730 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.728 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.728 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.728 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 1xmv | ADP | Protein RecA | / | 0.726 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.726 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.726 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.725 | |
| 2zts | ADP | Uncharacterized protein | / | 0.725 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.724 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.723 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.723 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.722 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.722 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.721 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.721 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.720 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.720 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.719 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.718 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.718 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.718 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.718 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.717 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.717 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.716 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.716 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.715 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.714 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.714 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.714 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.713 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.713 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.712 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.712 | |
| 5cyo | GDP | Septin-9 | / | 0.712 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.711 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.711 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.710 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.710 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.709 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.708 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.708 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.708 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.708 | |
| 1nly | AGS | Cag alpha | / | 0.706 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.705 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.704 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.704 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.704 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.703 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.703 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.702 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.701 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.700 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.700 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.700 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.700 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.700 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.699 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.698 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.698 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.697 | |
| 3hpq | AP5 | Adenylate kinase | / | 0.697 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.697 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.697 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.695 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.695 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.695 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.693 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.691 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.691 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.691 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.691 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.691 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.690 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.690 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.690 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.689 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.687 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.686 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.685 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.685 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.682 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.682 | |
| 2ad5 | ADP | CTP synthase | / | 0.681 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.681 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.679 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.678 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.677 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.676 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.675 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.675 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.675 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.674 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.674 | |
| 4e2x | TYD | Methyltransferase | / | 0.674 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.673 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.673 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.673 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.672 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.671 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.669 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.667 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.667 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.667 | |
| 1rqj | IPE | Farnesyl diphosphate synthase | 2.5.1.10 | 0.666 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.666 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.665 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.665 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.665 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.665 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.664 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.664 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.664 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.663 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.663 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.662 | |
| 2eck | ADP | Adenylate kinase | / | 0.662 | |
| 2zrj | AGS | Protein RecA | / | 0.660 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.660 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 4tv9 | GTP | Tubulin alpha-1B chain | / | 0.659 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.658 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.658 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.658 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.657 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.657 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.656 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.654 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.653 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.653 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.653 | |
| 4xvu | ATP | ATPase GET3 | / | 0.653 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.651 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.651 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.651 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.650 |