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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rql X2D Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rql X2DNitric oxide synthase, brain 1.14.13.39 1.083
3png 8CXNitric oxide synthase, brain 1.14.13.39 0.872
3rqk X2CNitric oxide synthase, brain 1.14.13.39 0.840
3rqm X2ENitric oxide synthase, brain 1.14.13.39 0.798
3svp JK5Nitric oxide synthase, brain 1.14.13.39 0.792
3jwt JI5Nitric oxide synthase, brain 1.14.13.39 0.788
3nlz 3XDNitric oxide synthase, brain 1.14.13.39 0.758
3pne 8AXNitric oxide synthase, brain 1.14.13.39 0.754
3rqj Y2BNitric oxide synthase, brain 1.14.13.39 0.753
4cx5 HW8Nitric oxide synthase, brain 1.14.13.39 0.732
3pnf 8BXNitric oxide synthase, brain 1.14.13.39 0.727
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.720
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.714
3jx6 JI5Nitric oxide synthase, brain 1.14.13.39 0.712
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.703
3ufu HW8Nitric oxide synthase, brain 1.14.13.39 0.700
3uft HW7Nitric oxide synthase, brain 1.14.13.39 0.688
3ufw HW0Nitric oxide synthase, brain 1.14.13.39 0.676
3jx3 JI5Nitric oxide synthase, brain 1.14.13.39 0.664
1drt PCVClavaminate synthase 1 1.14.11.21 0.660
3nly 3XCNitric oxide synthase, brain 1.14.13.39 0.658
3svq JK4Nitric oxide synthase, brain 1.14.13.39 0.657
3ufv HW9Nitric oxide synthase, brain 1.14.13.39 0.652